PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000753.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 160aa    MW: 18642.5 Da    PI: 9.4476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000753.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19107157256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              +++GVr+++ +g+Wv+eIrdp+    r  r +lg ++t eeAa  +++a++kl+g+
  Itr_sc000753.1_g00001.1 107 KFRGVRQRP-WGKWVVEIRDPT----ReVRLWLGIYDTVEEAAMVYDNAALKLRGP 157
                              89*******.**********83....47**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-24106158IPR001471AP2/ERF domain
SMARTSM003803.2E-21107160IPR001471AP2/ERF domain
CDDcd000186.80E-24107159No hitNo description
PROSITE profilePS5103220.574107160IPR001471AP2/ERF domain
PfamPF008471.6E-12107156IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17107158IPR016177DNA-binding domain
PRINTSPR003673.7E-9108119IPR001471AP2/ERF domain
PRINTSPR003673.7E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAPPIXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTDLK KVRITDLDAT DTSSDEEELY  60
ERRRVRRYIH EINIETTINI DAVKSGKKRP VAEVKEAPVP AVNRVRKFRG VRQRPWGKWV  120
VEIRDPTREV RLWLGIYDTV EEAAMVYDNA ALKLRGPDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-16106156455ATERF1
3gcc_A6e-16106156455ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1719882e-79GU171988.1 Ipomoea batatas microsatellite Stv_Ipb_1659 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868349.12e-45PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE32e-35CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM0ZQQ93e-44M0ZQQ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000060419e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-27cytokinin response factor 2